-Genomic Data for VSX2 Links
Protein
VSX2
UniPROBE Accession Number
UP00626
Species
Homo sapiens
Domain
Homeobox
Swiss-Prot
P58304
Name and Synonyms
Name: visual system homeobox 2.
Synonyms:Ceh-10 homeodomain-containing homolog, CHX10, Homeobox protein CHX10, HOX10, MCOP2, MCOPCB3, RET1, Visual system homeobox 2
IHOP
111191
NCBI RefSeq
NP_878314
Description
This gene encodes a homeobox protein originally described as a retina-specific transcription factor. Mutations in this gene are associated with microphthalmia, cataracts and iris abnormalities. Plays a significant role in the specification and morphogenesis of the sensory retina. May also participate in the development of the cells of the inner nuclear layer, particularly bipolar cells (By similarity).
JASPAR
None Available
-PBM Motif Data for VSX2_REF_R1
PBM-Derived DNA Binding Site Motif (Seed-And-Wobble)
Image Not Available. We apologize for the inconvenience.
PWM
Save
Top Kmer
TTAATTAA E.S. 0.500
TTAATTAA E.S. 0.500
Downloads
Download the zip of all VSX2_REF PBM files, or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
-PBM Motif Data for VSX2_R200P_R1
PBM-Derived DNA Binding Site Motif (Seed-And-Wobble)
Image Not Available. We apologize for the inconvenience.
PWM
Save
Top Kmer
T.TAATATA E.S. 0.448
TATATTA.A E.S. 0.448
Downloads
Download the zip of all VSX2_R200P PBM files, or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
-PBM Motif Data for VSX2_R200Q_R1
PBM-Derived DNA Binding Site Motif (Seed-And-Wobble)
Image Not Available. We apologize for the inconvenience.
PWM
Save
Top Kmer
TTAATTAA E.S. 0.500
TTAATTAA E.S. 0.500
Downloads
Download the zip of all VSX2_R200Q PBM files, or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Download Data for VSX2 (all alleles)
Downloads
Download the zip of all VSX2 PBM files, or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
-VSX2 Datasets
Clone Clone Type Last Modified Save View
VSX2_REF DNA binding domain only search save
VSX2_REF Insert Sequence
1   RKMSKSALNQ TKKRKKRRHR TIFTSYQLEE LEKAFNEAHY PDVYAREMLA
51  MKTELPEDRI QVWFQNRRAK WRKREKCWGR SSVMAEYGLY


VSX2_R200P DNA binding domain only search save
VSX2_R200P Insert Sequence
1   RKMSKSALNQ TKKRKKRRHR TIFTSYQLEE LEKAFNEAHY PDVYAREMLA
51  MKTELPEDRI QVWFQNRPAK WRKREKCWGR SSVMAEYGLY


VSX2_R200Q DNA binding domain only search save
VSX2_R200Q Insert Sequence
1   RKMSKSALNQ TKKRKKRRHR TIFTSYQLEE LEKAFNEAHY PDVYAREMLA
51  MKTELPEDRI QVWFQNRQAK WRKREKCWGR SSVMAEYGLY


References
Data are analyzed by array designs with AMADID #s 030236, 015681 in Barrera et al., Science 2016


Supported Browsers:IE 7.0.6001.18000, Firefox 3.5.11, Google Chrome 5.0.375.125 beta